divo: Tools for Analysis of Diversity and Similarity in Biological Systems

Package: divo 1.0.2

divo: Tools for Analysis of Diversity and Similarity in Biological Systems

A set of tools for empirical analysis of diversity (a number and frequency of different types in a population) and similarity (a number and frequency of shared types in two populations) in biological or ecological systems.

Authors:Christoph Sadee [aut], Maciej Pietrzak [aut, cre], Michal Seweryn [aut], Cankun Wang [aut], Grzegorz Rempala [aut]

divo_1.0.2.tar.gz
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manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
divo/json (API)

# Install 'divo' in R:

install.packages('divo', repos = c('https://mpiet11.r-universe.dev', 'https://cloud.r-project.org'))

Datasets:

x - Example dataset for divo package

On CRAN:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

2.78 score 30 scripts 613 downloads 1 mentions 14 exports 1 dependencies

Last updated from:f41c0b94a7. Checks:13 OK. Indexed: yes.

Target	Result	Time
linux-devel-arm64	OK	128
linux-devel-x86_64	OK	107
source / vignettes	OK	156
linux-release-arm64	OK	110
linux-release-x86_64	OK	106
macos-release-arm64	OK	133
macos-release-x86_64	OK	188
macos-oldrel-arm64	OK	144
macos-oldrel-x86_64	OK	226
windows-devel	OK	84
windows-release	OK	87
windows-oldrel	OK	78
wasm-release	OK	95

Exports:cvg dp dp.ht ens ens.ht i.in i.inp ji li mh pg pg.ht rd srd

Dependencies:cluster

User Manual

Rendered fromdivo-Manual.Rnwusingutils::Sweave

Help page	Topics
cvg Coverage	cvg
Tools for Analysis of Diversity and Similarity in Biological Systems	divo
dp Diversity Profile	dp
dp.ht Diversity Profile with the Horvitz-Thompson Adjustment	dp.ht
ens Effective Number of Species	ens
ens.ht Effective Number of Species with the Horvitz-Thompson Correction	ens.ht
i.in Information Index (I index) for 2-Way Table	i.in
i.inp Information Index (I index) for 2-Way, 2 Column Table	i.inp
ji Jaccard Index	ji
li Sorensen Index	li
mh Morisita-Horn Index	mh
pg Power-Geometric Index	pg
pg.ht Power-Geometric Index with the Horvitz-Thompson Correction	pg.ht
rd Renyi's Divergence	rd
srd Symmetrized Renyi's Divergence	srd
TCR.Data: Repertoires of Naive and Regulatory T-cell Populations	TCR.Data
Example dataset for divo package	x

Help page

Topics

cvg Coverage

cvg

Tools for Analysis of Diversity and Similarity in Biological Systems

divo

dp Diversity Profile

dp.ht Diversity Profile with the Horvitz-Thompson Adjustment

dp.ht

ens Effective Number of Species

ens

ens.ht Effective Number of Species with the Horvitz-Thompson Correction