{
  "_id": "6a23e74c530b9bc726be91ec",
  "Package": "divo",
  "Version": "1.0.2",
  "Type": "Package",
  "Date": "2025-02-14",
  "Title": "Tools for Analysis of Diversity and Similarity in Biological\nSystems",
  "Authors@R": "c(person(given = \"Christoph\",\nfamily = \"Sadee\",\nrole = \"aut\"),\nperson(given = \"Maciej\",\nfamily = \"Pietrzak\",\nrole = c(\"aut\", \"cre\"),\nemail = \"pietrzak.20@osu.edu\"),\nperson(given = \"Michal\",\nfamily = \"Seweryn\",\nrole = \"aut\"),\nperson(given = \"Cankun\",\nfamily = \"Wang\",\nrole = \"aut\"),\nperson(given = \"Grzegorz\",\nfamily = \"Rempala\",\nrole = \"aut\"))",
  "Maintainer": "Maciej Pietrzak <pietrzak.20@osu.edu>",
  "Description": "A set of tools for empirical analysis of diversity (a\nnumber and frequency of different types in a population) and\nsimilarity (a number and frequency of shared types in two\npopulations) in biological or ecological systems.",
  "License": "GPL (>= 3)",
  "Encoding": "UTF-8",
  "NeedsCompilation": "yes",
  "Packaged": {
    "Date": "2026-06-06 09:20:04 UTC",
    "User": "root"
  },
  "Author": "Christoph Sadee [aut], Maciej Pietrzak [aut, cre], Michal\nSeweryn [aut], Cankun Wang [aut], Grzegorz Rempala [aut]",
  "Repository": "https://mpiet11.r-universe.dev",
  "Date/Publication": "2025-02-16 03:20:02 UTC",
  "RemoteUrl": "https://github.com/cran/divo",
  "RemoteRef": "HEAD",
  "RemoteSha": "f41c0b94a7172e4dbca1e575c2453fcbbaaf1831",
  "MD5sum": "ee8c1f22955d3d1464773453fbd69ff1",
  "_user": "mpiet11",
  "_type": "src",
  "_file": "divo_1.0.2.tar.gz",
  "_fileid": "704f5ac88279980efdbc55ebd96e30bf0b41101bb5b9302cfeb99b772029e908",
  "_filesize": 364314,
  "_sha256": "704f5ac88279980efdbc55ebd96e30bf0b41101bb5b9302cfeb99b772029e908",
  "_created": "2026-06-06T09:20:04.000Z",
  "_published": "2026-06-06T09:24:28.443Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 79867149793,
      "time": 116,
      "config": "linux-devel-arm64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7453208551"
    },
    {
      "job": 79867149781,
      "time": 110,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7453207531"
    },
    {
      "job": 79867149784,
      "time": 106,
      "config": "linux-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7453207451"
    },
    {
      "job": 79867149780,
      "time": 101,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7453206599"
    },
    {
      "job": 79867149758,
      "time": 233,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7453213180"
    },
    {
      "job": 79867149755,
      "time": 227,
      "config": "macos-oldrel-x86_64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7453217993"
    },
    {
      "job": 79867149746,
      "time": 120,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7453206141"
    },
    {
      "job": 79867149742,
      "time": 198,
      "config": "macos-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7453214273"
    },
    {
      "job": 79867010248,
      "time": 151,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7453195366"
    },
    {
      "job": 79867149740,
      "time": 93,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7453205603"
    },
    {
      "job": 79867149744,
      "time": 99,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7453206260"
    },
    {
      "job": 79867149741,
      "time": 95,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7453205988"
    },
    {
      "job": 79867149754,
      "time": 81,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7453204271"
    }
  ],
  "_buildurl": "https://github.com/r-universe/mpiet11/actions/runs/27058456447",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/cran/divo",
  "_commit": {
    "id": "f41c0b94a7172e4dbca1e575c2453fcbbaaf1831",
    "author": "Maciej Pietrzak <pietrzak.20@osu.edu>",
    "committer": "cran-robot <csardi.gabor+cran@gmail.com>",
    "message": "version 1.0.2\n",
    "time": 1739676002
  },
  "_maintainer": {
    "name": "Maciej Pietrzak",
    "email": "pietrzak.20@osu.edu",
    "login": "mpiet11",
    "description": "",
    "uuid": 30442104
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 4.0.0",
      "role": "Depends"
    },
    {
      "package": "cluster",
      "role": "Depends"
    },
    {
      "package": "grDevices",
      "role": "Imports"
    },
    {
      "package": "graphics",
      "role": "Imports"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "utils",
      "role": "Imports"
    }
  ],
  "_owner": "cran",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_stars": 0,
  "_contributors": [
    {
      "user": "mpiet11",
      "count": 6,
      "uuid": 30442104
    }
  ],
  "_userbio": {
    "uuid": 30442104,
    "type": "user",
    "name": "Maciej Pietrzak"
  },
  "_downloads": {
    "count": 632,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/divo"
  },
  "_mentions": 1,
  "_searchresults": 30,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/divo.html",
    "manual.pdf"
  ],
  "_realowner": "mpiet11",
  "_cranurl": false,
  "_releases": [
    {
      "version": "0.1",
      "date": "2015-01-29"
    },
    {
      "version": "0.1.1",
      "date": "2015-02-03"
    },
    {
      "version": "0.1.2",
      "date": "2016-01-07"
    },
    {
      "version": "1.0.0",
      "date": "2017-10-18"
    },
    {
      "version": "1.0.1",
      "date": "2019-12-17"
    },
    {
      "version": "1.0.2",
      "date": "2025-02-16"
    }
  ],
  "_exports": [
    "cvg",
    "dp",
    "dp.ht",
    "ens",
    "ens.ht",
    "i.in",
    "i.inp",
    "ji",
    "li",
    "mh",
    "pg",
    "pg.ht",
    "rd",
    "srd"
  ],
  "_datasets": [
    {
      "name": "x",
      "title": "Example dataset for divo package",
      "object": "TCR.Data",
      "file": "TCR.Data.rda",
      "class": [
        "matrix",
        "array"
      ],
      "fields": [
        "Col.Naive",
        "Col.Treg",
        "PLN.Naive",
        "PLN.Treg",
        "MLN.Naive",
        "MLN.Treg",
        "Thym.Naive",
        "Thym.Treg"
      ],
      "rows": 6208,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "cvg",
      "title": "cvg Coverage",
      "topics": [
        "cvg"
      ]
    },
    {
      "page": "divo",
      "title": "Tools for Analysis of Diversity and Similarity in Biological Systems",
      "topics": [
        "divo"
      ]
    },
    {
      "page": "dp",
      "title": "dp Diversity Profile",
      "topics": [
        "dp"
      ]
    },
    {
      "page": "dp.ht",
      "title": "dp.ht Diversity Profile with the Horvitz-Thompson Adjustment",
      "topics": [
        "dp.ht"
      ]
    },
    {
      "page": "ens",
      "title": "ens Effective Number of Species",
      "topics": [
        "ens"
      ]
    },
    {
      "page": "ens.ht",
      "title": "ens.ht Effective Number of Species with the Horvitz-Thompson Correction",
      "topics": [
        "ens.ht"
      ]
    },
    {
      "page": "i.in",
      "title": "i.in Information Index (I index) for 2-Way Table",
      "topics": [
        "i.in"
      ]
    },
    {
      "page": "i.inp",
      "title": "i.inp Information Index (I index) for 2-Way, 2 Column Table",
      "topics": [
        "i.inp"
      ]
    },
    {
      "page": "ji",
      "title": "ji Jaccard Index",
      "topics": [
        "ji"
      ]
    },
    {
      "page": "li",
      "title": "li Sorensen Index",
      "topics": [
        "li"
      ]
    },
    {
      "page": "mh",
      "title": "mh Morisita-Horn Index",
      "topics": [
        "mh"
      ]
    },
    {
      "page": "pg",
      "title": "pg Power-Geometric Index",
      "topics": [
        "pg"
      ]
    },
    {
      "page": "pg.ht",
      "title": "pg.ht Power-Geometric Index with the Horvitz-Thompson Correction",
      "topics": [
        "pg.ht"
      ]
    },
    {
      "page": "rd",
      "title": "rd Renyi's Divergence",
      "topics": [
        "rd"
      ]
    },
    {
      "page": "srd",
      "title": "srd Symmetrized Renyi's Divergence",
      "topics": [
        "srd"
      ]
    },
    {
      "page": "TCR.Data",
      "title": "TCR.Data: Repertoires of Naive and Regulatory T-cell Populations",
      "topics": [
        "TCR.Data"
      ]
    },
    {
      "page": "x",
      "title": "Example dataset for divo package",
      "topics": [
        "x"
      ]
    }
  ],
  "_rundeps": [
    "cluster"
  ],
  "_vignettes": [
    {
      "source": "divo-Manual.Rnw",
      "filename": "divo-Manual.pdf",
      "title": "User Manual",
      "engine": "utils::Sweave",
      "headings": [],
      "created": "2015-01-29 07:24:08",
      "modified": "2025-02-16 03:20:02",
      "commits": 6
    },
    {
      "source": "divo-Vignette.Rnw",
      "filename": "divo-Vignette.pdf",
      "title": "Vignette",
      "engine": "utils::Sweave",
      "headings": [],
      "created": "2015-01-29 07:24:08",
      "modified": "2025-02-16 03:20:02",
      "commits": 5
    }
  ],
  "_score": 2.778151250383644,
  "_indexed": true,
  "_nocasepkg": "divo",
  "_universes": [
    "mpiet11"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.0.2",
      "date": "2026-06-06T09:22:09.000Z",
      "distro": "noble",
      "arch": "aarch64",
      "commit": "f41c0b94a7172e4dbca1e575c2453fcbbaaf1831",
      "fileid": "d9c10072857cc3a34111959bbafd79ab5c1e3cba80d6998aadbb5326f7725f87",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/mpiet11/actions/runs/27058456447"
    },
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.0.2",
      "date": "2026-06-06T09:21:55.000Z",
      "distro": "noble",
      "arch": "x86_64",
      "commit": "f41c0b94a7172e4dbca1e575c2453fcbbaaf1831",
      "fileid": "86e1dd2606a7d2402b3d193159de0f58ab62c4855edb0fa98b86a7939546e5f3",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/mpiet11/actions/runs/27058456447"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.0.2",
      "date": "2026-06-06T09:21:58.000Z",
      "distro": "noble",
      "arch": "aarch64",
      "commit": "f41c0b94a7172e4dbca1e575c2453fcbbaaf1831",
      "fileid": "6f489787da2849fad08f272289e15739482a8db2f57d17b5c3cddd2daae43d7f",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/mpiet11/actions/runs/27058456447"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.0.2",
      "date": "2026-06-06T09:21:46.000Z",
      "distro": "noble",
      "arch": "x86_64",
      "commit": "f41c0b94a7172e4dbca1e575c2453fcbbaaf1831",
      "fileid": "e70896465c6d4a4ec4703a60b233f3f202483406ad13f9097af29a46ba00d632",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/mpiet11/actions/runs/27058456447"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.0.2",
      "date": "2026-06-06T09:22:45.000Z",
      "arch": "aarch64",
      "commit": "f41c0b94a7172e4dbca1e575c2453fcbbaaf1831",
      "fileid": "8fdf2570dbca6fa2190a7b9a138b4a30ac8e6fdd9cd57a8aab9b7773960ed099",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/mpiet11/actions/runs/27058456447"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.0.2",
      "date": "2026-06-06T09:23:23.000Z",
      "arch": "x86_64",
      "commit": "f41c0b94a7172e4dbca1e575c2453fcbbaaf1831",
      "fileid": "46c39ff2c69013e77970b16fc964ccf325ce439140d7f7c429b5f807a78a224b",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/mpiet11/actions/runs/27058456447"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.0.2",
      "date": "2026-06-06T09:21:44.000Z",
      "arch": "aarch64",
      "commit": "f41c0b94a7172e4dbca1e575c2453fcbbaaf1831",
      "fileid": "0ef733f15906431bc4b2afc367bd7fb4fb80966de4a5e8933c84baa6c5f69de5",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/mpiet11/actions/runs/27058456447"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.0.2",
      "date": "2026-06-06T09:22:48.000Z",
      "arch": "x86_64",
      "commit": "f41c0b94a7172e4dbca1e575c2453fcbbaaf1831",
      "fileid": "48ebaa45d8843e1915a8429e303dda34332847d2b45caa9b20fdae464b019a4e",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/mpiet11/actions/runs/27058456447"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.0.2",
      "date": "2026-06-06T09:21:47.000Z",
      "arch": "emscripten",
      "commit": "f41c0b94a7172e4dbca1e575c2453fcbbaaf1831",
      "fileid": "1bf9737afa20406d99e9672d22fcc0c835d7212fe1e34aab1a1d2d37df79a75d",
      "status": "success",
      "buildurl": "https://github.com/r-universe/mpiet11/actions/runs/27058456447"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.0.2",
      "date": "2026-06-06T09:21:14.000Z",
      "arch": "x86_64",
      "commit": "f41c0b94a7172e4dbca1e575c2453fcbbaaf1831",
      "fileid": "600005553e93dac153965755fa0dc9661ab3cf7e525259462972199e305d8dab",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/mpiet11/actions/runs/27058456447"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.0.2",
      "date": "2026-06-06T09:21:17.000Z",
      "arch": "x86_64",
      "commit": "f41c0b94a7172e4dbca1e575c2453fcbbaaf1831",
      "fileid": "613b9cda48417989d494772898a081c12127eefec98da2dc8f05ea5a7d4e1982",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/mpiet11/actions/runs/27058456447"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "1.0.2",
      "date": "2026-06-06T09:21:03.000Z",
      "arch": "x86_64",
      "commit": "f41c0b94a7172e4dbca1e575c2453fcbbaaf1831",
      "fileid": "baa526dc34654f78c5d635e159579b6839511073f80ee355ac00cdcb43b30da0",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/mpiet11/actions/runs/27058456447"
    }
  ]
}