Package: nemoR 0.99.3

nemoR: Access Open 'NeMO Archive' Datasets

Provides helpers for discovering, planning, and downloading open-access datasets from the Neuroscience Multi-Omic Archive ('NeMO'; <https://nemoarchive.org/>). The package builds reproducible file manifests that record search parameters, file metadata, download URLs, checksums, and local file paths. It supports exploratory 'NeMO' metadata queries and provides first-pass bridges from downloaded files into 'SingleCellExperiment' and 'Seurat' workflows.

Authors:Maciej Pietrzak [aut, cre], AbdElrahman Amer [aut]

nemoR_0.99.3.tar.gz
nemoR_0.99.3.zip(r-4.7)nemoR_0.99.3.zip(r-4.6)nemoR_0.99.3.zip(r-4.5)
nemoR_0.99.3.tgz(r-4.6-any)nemoR_0.99.3.tgz(r-4.5-any)
nemoR_0.99.3.tar.gz(r-4.7-any)nemoR_0.99.3.tar.gz(r-4.6-any)
nemoR_0.99.3.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
nemoR/json (API)

# Install 'nemoR' in R:
install.packages('nemoR', repos = c('https://mpiet11.r-universe.dev', 'https://cloud.r-project.org'))

On CRAN:

Conda:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

3.00 score 37 exports 19 dependencies

Last updated from:278ff033b9. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK206
source / vignettesOK243
linux-release-x86_64OK248
macos-release-arm64OK144
macos-oldrel-arm64OK102
windows-develOK120
windows-releaseOK147
windows-oldrelOK119
wasm-releaseOK196

Exports:nemo_access_typesnemo_as_scenemo_as_seuratnemo_assaysnemo_brain_regionsnemo_cache_dirnemo_collectionnemo_collectionsnemo_data_typesnemo_downloadnemo_download_plannemo_example_collectionsnemo_facet_valuesnemo_fetchnemo_filenemo_file_formatsnemo_filesnemo_labsnemo_loadnemo_manifestnemo_manifest_from_urlsnemo_modalitiesnemo_platformsnemo_projectnemo_read_10x_h5nemo_read_h5adnemo_read_manifestnemo_read_mtxnemo_searchnemo_search_fieldsnemo_search_manifestnemo_speciesnemo_studiesnemo_taxanemo_techniquesnemo_validate_manifestnemo_write_manifest

Dependencies:askpassclicurlgluehttr2jsonlitelifecyclemagrittropensslpillarpkgconfigR6rappdirsrlangsystibbleutf8vctrswithr

nemoR quick start
Introduction | Installation | Discover available metadata values | Search NeMO records | Build a reproducible manifest without downloading | Inspect a planned download | Save and restore the manifest | Download when ready | Session information
Rendered fromnemoR-quick-start.Rmdusingknitr::rmarkdown

Last update: 2026-07-06
Started: 2026-07-06

Manifests and safe downloads with nemoR
Introduction | Installation | Create a small manifest | Validate and summarize | Understand download status columns | Check a local checksum | Download real files | Load downloaded data | Session information
Rendered fromnemoR-manifests-and-downloads.Rmdusingknitr::rmarkdown

Last update: 2026-07-06
Started: 2026-07-06

Readme and manuals

Help Manual

Help pageTopics
List available file access categoriesnemo_access_types
Convert downloaded NeMO files to a SingleCellExperimentnemo_as_sce
Convert a SingleCellExperiment to a Seurat objectnemo_as_seurat
List available assaysnemo_assays
List available brain regions/anatomiesnemo_brain_regions
Get the nemoR cache directorynemo_cache_dir
Retrieve a NeMO collectionnemo_collection
List NeMO collectionsnemo_collections
List available file data typesnemo_data_types
Download files from a NeMO manifestnemo_download
Summarize a planned NeMO downloadnemo_download_plan
Example public NeMO collection identifiersnemo_example_collections
List available values for NeMO portal facetsnemo_facet_values
Search NeMO and download matching filesnemo_fetch
Retrieve a NeMO file recordnemo_file
List available file formatsnemo_file_formats
List files attached to a NeMO collectionnemo_files
List available labsnemo_labs
Load downloaded NeMO files into an analysis objectnemo_load
Build a reproducible NeMO file manifestnemo_manifest
Build a NeMO manifest from direct URLsnemo_manifest_from_urls
List available modalitiesnemo_modalities
List available sequencing or assay platformsnemo_platforms
Retrieve a NeMO projectnemo_project
Read a downloaded 10x Genomics HDF5 filenemo_read_10x_h5
Read a downloaded H5AD file as a SingleCellExperimentnemo_read_h5ad
Read a NeMO manifestnemo_read_manifest
Read a Matrix Market count matrix directorynemo_read_mtx
Search NeMO portal files, samples, or projectsnemo_search
List searchable NeMO portal fieldsnemo_search_fields
Search NeMO and build a download-ready manifestnemo_search_manifest
List available species or taxa in NeMOnemo_species
List available studies/grantsnemo_studies
List available taxanemo_taxa
List available techniquesnemo_techniques
Validate a NeMO manifestnemo_validate_manifest
Write a NeMO manifestnemo_write_manifest